other:Article Title: USP24-i-101 targeting of USP24 activates autophagy to inhibit drug resistance acquired during cancer therapy.
Article Snippet: The anti-LC3-II (1:1000) (#3868, Cell Signaling technology, Danvers, MA, USA), anti-ULK1 (1:1000) (#8054, Cell Signaling technology, Danvers, MA, USA), anti-p62 (1:1000) (GTX100685, Genetex, Alton Pkwy Irvine, CA, USA), anti- Phospho-ULK1 (1:1000) (Ser555) (#5869, Cell Signaling technology, Danvers, MA, USA), anti-USP24 (1:1000) (13126- 1-AP, Proteintech, Rosemont, IL, USA), anti-E2F4 (1:1000) (ab150360, Abcam, Cambridge, MA, USA), anti-E2F1 (1:1000) (#3742, Cell Signaling technology, Danvers, MA, USA), anti-γ-H2AX (1:1000) (AP0099, Abclonal, China), anti-CCNB1 (1:200) (sc-245, Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-TRAF6 (1:1000) (#8028, Cell Signaling technology, Danvers, MA, USA), anti-ATG3 (1:1000) (#3415, Cell Signaling technology, Danvers, MA, USA), anti-ATG4B (1:1000) (GTX115678, Genetex, Alton Pkwy Irvine, CA, USA), anti-ATG5 (1:1000) (#12994, Cell Signaling technology, Danvers, MA, USA), anti-ATG7 (1:1000) (#8558, Cell Signaling technology, Danvers, MA, USA), anti-ATG12 (#4180, Cell Signaling technology, Danvers, MA, USA), anti-ATG16L1 (1:1000) (#8089, Cell Signaling technology, Danvers, MA, USA), anti-mTOR (1:1000) (#ab2732, Abcam, Cambridge, MA, USA), anti-pmTOR(S2448) (1:1000) (ab109268, Abcam, Cambridge, MA, USA), antiBeclin-1 (1:1000) (#3495, Cell Signaling technology, Danvers, MA, USA), anti-ABCG2 (1:1000) (#42078, Cell Signaling technology, Danvers, MA, USA), anti-PD-L1 (1:1000) (GTX104763, Genetex, Alton Pkwy Irvine, CA, USA), and anti-actin (1:3000) (GTX26276, Genetex, Alton Pkwy Irvine, CA, USA) were used as the first antibodies.
Article Title: SARS-CoV-2 Omicron Envelope T9I adaptation confers resistance to autophagy
Article Snippet: Primary antibodies used in this study: Polyclonal rabbit anti-StrepII (1:2000; Abcam, #ab76949), monoclonal mouse anti-V5 (1:3000; Cell Signalling, #80076), monoclonal mouse anti-VSV-M (1:5000; Kerafast, #EB0011), polyclonal rabbit anti-LC3 (1:200; Sigma-Aldrich, #L8918), monoclonal mouse anti-p62 (1:1000; Abcam, ab56416), polyclonal rabbit anti-IFITM1 (1:500; Cell Signaling, #13126), polyclonal rabbit anti-IFITM2 (1:500; Abcam, #ab236735), monoclonal rabbit anti-IFITM3 (1:500; Cell Signaling, #59212), monoclonal rat anti-GAPDH (1:1000; Biolegend, #607902) and monoclonal mouse anti-β-actin (1:10,000; Sigma-Aldrich, #A5441).
Article Title: Alternative splicing expands the antiviral IFITM repertoire in Chinese rufous horseshoe bats
Article Snippet: The following antibodies and dilutions were used: mouse anti-FLAG-M2 (Sigma; 1:20,000), mouse anti-IFITM1 (Proteintech; 1:50,000), rabbit anti-IFITM2 (Cell Signalling Technology; 1:1,000), rabbit anti-fragilis (Abcam; 1:5,000), mouse anti-beta-actin (Santa Cruz Biotechnology; 1:1,000), rabbit anti-alpha-tubulin (Proteintech; 1:10,000), mouse anti-GAPDH (Proteintech; 1:1,000), IRDye 800CW goat anti-mouse (LICOR; 10,000), IRDye 800CW goat anti-rabbit (LICOR; 1:10,000), HRP-conjugated goat anti-rabbit IgG (Abcam; 10,000), HRP-conjugated goat anti-mouse IgG (Abcam; 10,000).
Article Title: USP24-i-101 targeting of USP24 activates autophagy to inhibit drug resistance acquired during cancer therapy.
Article Snippet: The anti-USP24 (1:200) (13126-1-AP, Proteintech, USA), anti-PD-L1 (1:200) (#13684, Cell Signaling technology, Danvers, MA, USA), anti-LC3-II (1:200) (#3868, Cell Signaling technology, Danvers, MA, USA) and anti-CD3 (1:200) antibodies (A700-174, Bethyl Laboratories, Inc., Montgomery, TX, USA) were used to cover sections for 1 h at room temperature, and the Vectastain ABC kit (Vector Laboratories, Burlingame, CA, USA) was used for visualizing the immunoreactivity.
Western Blot:Article Title: Mutation T9I in Envelope confers autophagy resistance to SARS-CoV-2 Omicron
Article Snippet: Polyclonal rabbit anti-ABCG2 Antibody (IP) , Cell Signaling Technology , Cat#4477S; RRID: AB 10544928. .. Polyclonal rabbit anti-IFITM1 Antibody (WB 1:500) , Cell Signaling Technology , Cat13126; RRID: AB_2798126. .. Polyclonal rabbit anti-IFITM2 Antibody (WB 1:500) , Abcam , Cat#ab236735.
Article Title: Mechanisms of mesothelial cell response to viral infections: HDAC1-3 inhibition blocks poly(I:C)-induced type I interferon response and modulates the mesenchymal/inflammatory phenotype
Article Snippet: .. The primary antibodies used for Western blotting experiments are mAb anti-E-cadherin (BD610181) from BD Transduction Laboratories (Franklin Lakes, NJ, USA). mAbs anti-Mx1 (sc-34128), anti-tubulin (sc-32293), anti-HSP90 (sc-13119) were from Santa Cruz Biotechnology (Dallas, TX, USA); Abs anti-IFIT1 (23247-1-AP), anti-Snail (L70G2), anti-STAT1 (9172), anti-phospho STAT3 (Y701), and anti-STAT3 (9132) were from Cell Signaling Technology (Danvers, MA, USA). pAb anti-IFITM1 (600-74-1) was from Proteintech (Rosemont, IL, USA). pAbs anti-MMP14 (ab53712) was from Abcam (Cambridge, UK): pAbs anti-phospho STAT1 (s727). .. HRP-conjugated secondary antibodies used were purchased from Jackson ImmunoResearch, Cambridge, UK: anti-rabbit (JI 711-036-152) and anti-mouse (JI 715-036-150).
Blocking Assay:Article Title: Mechanisms of antiviral activity of the new hDHODH inhibitor MEDS433 against respiratory syncytial virus replication.
Article Snippet: For immunoblotting, HEp-2 cell monolayers were left untreated or treated with 1 μM of MEDS433, or with 100 ng/ml of IFNα for 24 or 48 h. Protein extracts were then prepared as previously described (Luganini et al., 2008), and equal amounts were fractionated by 4–15% SDS-PAGE and then transferred to PVDF membranes (BioRad). .. Filters were blocked for 2 h at 37 ◦C in EveryBlot Blocking Buffer (BioRad), and immunostained with either the mouse anti-hDHODH mAb (E− 8, Santa Cruz Biotechnology), or the rabbit anti-IFI6 pAb (54355, Cell Signaling Technology, CST), or the rabbit anti-IFITM1 pAb (13126, CST), or the rabbit anti-IRF-7 mAb (D2A1J, CST), or the rabbit anti-IRF-1 mAb (D5E4, CST), or the rabbit anti-OAS2 pAb (54155, CST), or the rabbit anti-IRF3 mAb (D6I4C, CST), or the rabbit anti-phospho IRF3 (Ser 386) (E7J8G, CST). .. A rabbit anti-vinculin mAb (E1E9V, CST) or a rabbit anti-GAPDH mAb (D16H11, CST) were used as controls for protein loading.
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